Antibody purification: Frequently asked questions
 

Frequently asked questions: Antibody purification

 
1 How do you purify the antibodies?
  In most cases we follow a protocol based on Protein A or G affinity chromatography.
2 How do you determine the quantity of the purified antibody?
  We determine protein concentration by either Lowry Protein Assay against a BSA standard or OD-readings.
3 How do you check purity and quality of the purified antibody?
  We check purity and integrity of the purified antibody routinely by a denaturing and reducing SDS-PAGE. Furthermore, we can offer a range of optional quality and activity tests such as flow cytometry or ELISA. Any other test system can be established according to the customer's needs.
4 How do you determine the production rate of a given hybridoma?
  We usually determine productivity by an evaluation project (one liter). Depending on the outcome we recommend different protocols in order to purify the desired amount of antibody in the most appropriate way!
5 What types of antibodies do you purify?
  We can purify antibodies from sera, cell culture supernatants or ascites. In most cases, we purify antibodies of the IgG-subclasses, however, protocols for IgA and IgM are also available.
6 Do you deliver the antibody in a buffer containing azide?
  No, as azide might interfere with some special down-stream applications based on living cells. However, we can dissolve the antibody in PBS containing 0,02% sodium azide, if required.
7 How long do you need to purify my antibody?
 

Since we deal with living cells timelines of a project basically depend very much on the proliferation rate of the hybridoma or cell line in question. As a benchmark for a well proliferating cell line you can refer to the following timelines:

Sera, Ascites and purification starting with supernatant provided by the customer:
1 - 2 weeks depending on plant utilization.

Evaluation projects and cell culture based production and purification based on supernatant volume of up to 2 liter:
4-6 weeks

Larger volumes :
Please inquire

8 Can you purify my antibody from serum-free media?
  We usually cultivate the hybridomas in serum-free medium.
9 How do you avoid co-purification of bovine antibodies originating from fetal calf sera (FCS)?
  Since standard FCS does contain bovine antibodies in varying amounts and Protein G does bind bovine IgG, our cell culture schemes avoid the use of FCS!
10 Can you produce antibodies from ascites?
  Yes, we can. Please be aware of the fact, that for very fatty and viscous ascites the purification might involve additional clearing and pre-purification steps which might prolong timelines of ascites purification projects.
11 We have a transgenic CHO-line producing single-chain variable fragments (scFv)? Are you able to purify it?
  This depends on the exact features of your project! If an affinity tag is included into the scFv-framework, we can purify it based on this affinity tag. In case you do not have such a tag, it would depend on the availability of your antigen. Please inquire for more details.
12 Can you label antibodies?
  Yes, we offer labeling of antibodies based on all current dyes. Since we can offer a quality control for biotinylation (determination of average number of biotin per antibody molecule) most of our customers actually choose biotinylation. FITC and PE are the second and third most popular labels, with FITC being a good choice for intracellular staining due to its small size. However, its relative fluorescence makes it rather dim and therefore PE is a good choice for all applications with the need for bright signals.
13 Can you produce Fab or F(ab')2 fragments?
  Yes, we offer fragmentation of antibodies. Since efficiency of fragmentation very much depends on the isotype of your antibody, please inquire for more details .
14 Why do you offer a Mycoplasma-screening at the initial stage of the project?
  Mycoplasma are the major obstacle for cell culture! Furthermore, they often remain undetected. Since we do not want to risk any sort of reduced proliferation and production rate due to a possible contamination we initially screen all incoming cells by PCR. Thereby we ensure fast and productive processing of your order!
15 I am very much concerned about confidentiality since my antibody represents important IP to me. How do you ensure this confidentiality?
  We of course understand this very important issue of our customers. We have established a scheme which guarantees you absolute privacy: Although we freeze cells at an initial stage of the project as a back-up system, we can provide you with a certificate of destruction of these vials as well of the flow-through after purification and finalizing of the project. Furthermore, we are happy to sign an MTA or a CDA if necessary.
     
 
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